New version of transcriptome with Ribosomal Sequences removed.

http://eagle.fish.washington.edu/cnidarian/QPX_transcriptome_v1_clean.fasta

Ran RNA-seq in CLC







Using Kal Test and FDR corrected P-values 
1576 genes are Differentially Expressed.


727 expressed higher at 21 
849 expressed higher at 10


QPX_CLC_experiment_Kal_tab.txt



DEG List
QPX_DEG_Kal.txt

Joining with 
http://eagle.fish.washington.edu/whale/BIO533/FinalFinal_Supporting_Information/Table%20S1%20QPX_transriptome_annotations.txt


To Get SPID List for gene enrichment analysis.


918 of the 1576 had SwissProt ID.
Galaxy5-[Join_two_Datasets_on_data_3_and_data_2].tabular



DEG SP IDs
Galaxy6-[Cut_on_data_5].tabular



ALL SPIDs (5992 Ids)
Galaxy7-[Cut_on_data_3].tabular


Now to DAVID






chart_F2B2C1343C791358527193758.txt







REVIGO_treemap.csvREVIGO_treemap.r




QPX_David_genelist.xlsx

Joined with Annotations

David_genelist_annotation.xlsx

and now fold info…

Here is the Experiment from CLC

QPX_CLC_experiment_Kal.xlsx

Going to join in Galaxy









Enriched in 21 treatment








Enriched in 10C